tools to store/synchronize BDY files

models/nemo/maintenance_tools/synchronize_bdy_files.bash

+#!/bin/bash
+
+# This script should be used to synchronize BDY ocean forcing files from "storage" to the
+# machines where NEMO is to be run. It should be called on the target machine as:
+#
+#   ./synchronize_atmospheric_forcing_files.bash forcing configuration machine
+
+forcing=$1
+configuration=$2
+machine=$3
+
+# check the forcing
+if ! [[ "$forcing" =~ ^(oras5|placeholder)$ ]]
+then
+  echo "\"$forcing\" is not a supported forcing."
+  exit
+fi
+
+# check the configuration
+if ! [[ "$configuration" =~ ^(eANT025|placeholder)$ ]]
+then
+  echo "\"$configuration\" is not a supported configuration."
+  exit
+fi
+
+# adjust to the machine
+if [ "$machine" = "lemaitre3" ]
+then
+  destination_path=/scratch/ucl/elic/barthele/
+  storage_ssh_access=storage
+elif [ "$machine" = "lucia" ]
+then
+  destination_path=/gpfs/scratch/acad/limhr/barthele/
+  storage_ssh_access=storageVcism
+else
+  echo "\"$machine\" is not a supported machine."
+  exit
+fi
+
+# do the synchronization
+synchronize () {
+  rsync -avh --delete --progress \
+    ${storage_ssh_access}:/home/elic/barthele/reanalyses/ocean/$forcing/bdy_for_$configuration \
+    ${destination_path}/reanalyses/ocean/$forcing/bdy_for_$configuration
+}
+
+if [ "$machine" = "lucia" ]
+then
+  # comment:
+  #   - special care is required, otherwise "rsync" messes up the permissions and group memberships
+  #   - formulation suggested by PYB: rsync -uva --no-g --chmod=Dg+s my_folder lucia:/destination
+  #   - herebelow, another option based on "sg" is used
+
+  # required to make things available in "sg"
+  export storage_ssh_access forcing configuration destination_path
+  export -f synchronize
+
+  # using "sg"
+  sg limhr synchronize
+else
+  synchronize
+fi

reanalyses/atmosphere/era5/store_files_prepared_for_nemo.bash

 #!/bin/bash
 
 # This script can be used to send on "storage" the files from the atmosphere reanalysis ERA5 that
-# have been prepared for use as forcing in NEMO.
+# have been prepared for use as atmospheric forcing in NEMO.
 
 rsync -avh --progress /cofast/barthele/reanalyses/atmosphere/era5/drowned/*.nc \
   storage:~/reanalyses/atmosphere/era5/drowned/

reanalyses/ocean/oras5/store_bdy_files.bash

+#!/bin/bash
+
+# This script can be used to send on "storage" the BDY files (used to force regional
+# configurations of NEMO) that have been generated from the ocean reanalysis ORAS5.
+
+rsync -avh --progress /cofast/barthele/reanalyses/ocean/oras5/bdy_for_eANT025/*.nc \
+  storage:~/reanalyses/ocean/oras5/bdy_for_eANT025/